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AI Architecture

How to structure docs for AI agents

Transform documentation into AI agent knowledge bases.

Eugene Vyborov·
Documentation and knowledge management

Stop treating your project documentation like a digital filing cabinet. If you want AI agents to actually orchestrate code and solve problems, you have to fundamentally change how you structure information. Most developers feed agents raw context and hope for the best. That's a rookie mistake. To get real results, you need to structure your documents as a cognitive model - essentially building a 'mind' for the agent.

The four pillars of cognitive architecture

Here's the hard truth - an AI agent without a structured understanding of time is just a text generator flailing in the dark. The most effective way to orchestrate agents is to map your documentation directly to cognitive functions. You need to give the agent a clear framework for reasoning about the project's state.

The Past (changelog.md): This is the history of the project's evolution. It tells the agent where we've been and what decisions led us here.

The Present (architecture.md): This file needs to be an evergreen representation of your current reality. Instruct the agent to analyze existing code and update this document constantly. It is the absolute truth of 'now'.

The Future (requirements.md): This shouldn't be a static list of MVP features. It needs to be a living snapshot of the future state - a vision of what the system looks like when the work is done.

The Plan (roadmap.md): This connects the present to the future. It's the bridge. When you change the requirements, it must trickle down to the roadmap.

The workflow in practice

Implementing this structure requires a radical shift in how you work. You stop being a coder and start being an architect of intent. Instead of writing code, you manage the state of these documents.

When you want to change the system, don't touch the code. Edit the 'requirements.md' to reflect the new desired future state. Because the agent understands the relationship between these files, it automatically identifies the gap between the present and the future.

The agent then updates the roadmap to bridge that gap. It creates a plan. This is high signal work. You aren't micromanaging lines of code; you are orchestrating the project's evolution.

Reframing prompt engineering

This approach reframes prompt engineering entirely. We aren't just writing clever prompts anymore. We are building a cognitive architecture for agents. We are defining their understanding of time and purpose.

If you want ownership over complex AI systems, you have to treat documentation as the interface for reasoning. The files are the brain. You are simply guiding the thoughts.